Professor Hasnain has >300 publications in peer-reviewed journals of high impact, and >dozen patents. Hasnain has been/is associated with several prestigious journals such as Emerging Infectious Diseases (CDC, USA), Infection Genetics & Evolution (Elsevier), Gut Pathogens, J. Bio Sciences, Current Science, Plos One, Journal of Computer Science and System Biology -Omics Group, Medical Principles and Practice etc. as the Senior Editor/ Receiving Editor/ Editorial Board Member.



Malik AA, Sheikh JA, Ehtesham NZ, Hira S, Hasnain SE. Can Mycobacterium tuberculosis infection lead to cancer? Call for a paradigm shift in understanding TB and cancer. Int J Med Microbiol. 2022;312(5):151558. 

Sheikh JA, Malik AA, Quadir N, Ehtesham NZ, Hasnain SE. Learning from COVID-19 to tackle TB pandemic: From despair to hope. Lancet Reg Health Southeast Asia. 2022;2:100015.

Rani A, Ahmad F, Manjunath P, Saurabh A, Zarin S, Mitra DP, Hasnain SE, Ehtesham NZ. Mycobacterium tuberculosis methyltransferase Rv1515c can suppress host defense mechanisms by modulating immune functions utilizing a multipronged mechanism. Frontiers in Molecular Biosciences 2022; 9:906387.

Bhawe K, Das JK, Yoo C, Felty Q, Gong Z, Deoraj A, Liuzzi JP, Ehtesham NZ, Hasnain SE, Singh VP, Mohapatra I, Komotar RJ, Roy D. Nuclear respiratory factor 1 transcriptomic signatures as prognostic indicators of recurring aggressive mesenchymal glioblastoma and resistance to therapy in White American females. Journal of Cancer Research and Clinical Oncology 2022; 148(7):1641-1682.

Swargam S, Kumari I, Kumar A, Pradhan D, Alam A, Singh H, Jain A, Devi RK, Trivedi V, Ehtesham NZ, Hasnain SE, Ahmad S et. al. MycoVarP: Mycobacterium Variant and Drug Resistance Prediction Pipeline for whole-genome sequence data analysis. Frontiers in Bioinformatics 2021 DOI: 10.3389/fbinf.2021.805338

Ahmad F, Rani A, Alam A, Zarin S, Pandey S, Singh H, Hasnain SE, Ehtesham NZ. Macrophage: A cell with many faces and functions in Tuberculosis. Frontiers in Immunology 2022. 13:747799

Shariq M, Sheikh JA, Quadir N, Sharma N, Hasnain SE, Ehtesham NZ. COVID-19 and tuberculosis: the double whammy of respiratory pathogens. European Respiratory Review 2022;31(164):210264.

Sharma T, Alam A, Ehtram A, Rani A, Grover S, Ehtesham NZ, Hasnain SE. Mycobacterium tuberculosis PE_PGRS protein family acts as immunological decoy to subvert host immune response. International Journal of Molecular Sciences 2022;23(1):525.

Shariq M, Quadir N, Alam A, Zarin S, Sheikh JA, Sharma N, Samal J, Ahmad U, Kumari I, Hasnain SE, Ehtesham NZ. The exploitation of host autophagy and ubiquitin machinery by Mycobacterium tuberculosis in shaping immune responses and host defense during infection. Autophagy 2022:1-22

Nehvi IB, Quadir N, Khubaib M, Sheikh JA, Shariq M, Mohareer K, Banerjee S, Rahman SA, Ehtesham NZ, Hasnain SE. ArgD of Mycobacterium tuberculosis is a functional N-acetylornithine aminotransferase with moonlighting function as an effective immune modulator. International Journal of Medical Microbiology 2022;312(1):151544. 


Singh J, Alam A, Samal J, Maeurer M, Ehtesham NZ, Chakaya J, et al. Role of multiple factors likely contributing to severity-mortality of COVID-19. Infection Genetics and Evolution 2021; 96:105101.

Kumar V, Singh J, Hasnain SE, Sundar D. Possible Link between Higher Transmissibility of Alpha, Kappa and Delta Variants of SARS-CoV-2 and Increased Structural Stability of Its Spike Protein and hACE2 Affinity. International Journal of Molecular Sciences 2021;22(17).

Roy D, Ehtesham NZ, Hasnain SE, Is Mycobacterium tuberculosis carcinogenic to humans?  FASEB Journal  2021;35(9): e21853.

Kumar V, Singh J, Hasnain SE, Sundar D. Possible link between higher transmissibility of B.1.617 and B.1.1.7 variants of SARS-CoV-2 and increased structural stability of its spike protein and hACE2 affinity. bioRxiv 2021.

Manjunath P, Ahmad J, Samal J, Sheikh JA, Arora SK, Khubaib M, Aggarwal H, Kumari I, Luthra K, Rahman SA, Hasnain SE, Ehtesham NZ. Mycobacterium tuberculosis specific protein Rv1509 evoked efficient innate and adaptive immune response with canonical Th1 type of protective immune signature. Frontiers in Immunology 2021;12:706081.

Sharma N, Shariq M, Quadir N, Singh J, Sheikh JA, Hasnain SE, Ehtesham NZ. Mycobacterium tuberculosis protein PE6 (Rv0335c), a novel TLR4 agonist, evokes an inflammatory response and modulates the cell death pathways in macrophages to enhance intracellular survival. Frontiers in Immunology 2021, 12;12:696491.

Quadir N, Rahman SA, Ahmad J, Das AK, Arora N, Sheikh JA, Gupta NK, Kapur P, Dudeja M, Hasnain SE, Ehtesham NZ. Development and validation of signature sequence-based PCR for improved molecular diagnosis of tuberculosis. Journal of Molecular Diagnostics 2021;23(9):1138-1144.

Sharma T, Singh J, Grover S, Manjunath P, Firdos F, Alam A, Ehtesham NZ, Hasnain SE. PGRS Domain of Rv0297 of Mycobacterium tuberculosis Functions in A Calcium Dependent Manner. International Journal of Molecular Sciences 2021;22(17):9390.

Singh P, Jamal S, Ahmad F, Saqib N, Mehra S, Ali W, Roy D, Ehtesham NZ, Hasnain SE. Computational modeling and bioinformatic analyses of functional mutations in drug target genes in Mycobacterium tuberculosis. Computational and Structural Biotechnology, 2021;19:2423-2446.

Singh J, Rahman SA, Ehtesham NZ, Hira S, Hasnain SE. SARS-CoV-2 variants of concern are emerging in India. Nature Medicine 2021;27(7):1131-1133.

Singh J, Samal J, Kumar V, Sharma J, Agrawal U, Ehtesham NZ, Sundar D, Rahman SA, Hira S, Hasnain SE. Structure-Function Analyses of New SARS-CoV-2 Variants B.1.1.7, B.1.351 and B. Clinical Diagnostics, Therapeutic and Public Health Implications. Viruses 2021;13(3):439.

Ali S, Ehtram A, Arora N, Manjunath P, Roy D, Ehtesham NZ, Hasnain SE. The M. tuberculosis Rv1523 Methyltransferase Promotes Drug Resistance Through Methylation-Mediated Cell Wall Remodelling and Modulates Macrophages Immune Responses. Frontiers in Cellular and  Infection Microbiology 2021;11:622487.

Shariq M, Quadir N, Sharma N, Singh J, Sheikh JA, Khubaib M, Hasnain SE, Ehtesham NZ. Mycobacterium tuberculosis RipA Dampens TLR4- mediated Host Protective Response Using a Multi-Pronged Approach Involving Autophagy, Apoptosis, Metabolic Repurposing, and Immune Modulation. Frontiers in Immunology 2021;12:636644.

Ehtram A, Shariq M, Ali S, Quadir N, Sheikh JA, Ahmad F, Sharma T, Ehtesham NZ, Hasnain SE. Teleological cooption of Mycobacterium tuberculosis PE/PPE proteins as porins: Role in molecular immigration and emigration. International Journal of Medical Microbiology 2021;311(3):151495.

Chakaya J, Khan M, Ntoumi F, Aklillu E, Fatima R, Mwaba P, Kapata N, Mfinanga S, Hasnain SE, Katoto PDMC, Bulabula ANH, Sam-Agudu NA, Nachega JB, Tiberi S, McHugh TD, Abubakar I, Zumla A. Global Tuberculosis Report 2020- Reflections on the Global TB burden, treatment and prevention efforts. International Journal of Infectious Disease 2021;S1201-9712(21)00193-4.

Shariq M, Quadir N, Sheikh JA, Singh AK, Bishai WR, Ehtesham NZ and Hasnain, S. Post translational modifications in Tuberculosis: Ubiquitination paradox. Autophagy 2021;17(3):814-817.


Singh J, Ehtesham NZ, Hasnain SE. Two parallel pandemics: the challenges faced by countries with Covid-19 and TB. International Journal of Tuberculosis Lung Disease 2020;24(12):1319-1320. 

Jamal S, Singh J, Sheikh JA, Singh H, Khubaib M, Kohli S, Dobrindt U, Rahman SA, Ehtesham NZ, Hasnain SE. Molecular analyses of over hundred sixty clinical isolates of SARS-CoV-2: Insights on likely origin, evolution, spread, and possible intervention. Preprints 2020, 2020030320 doi:10.20944/preprints202003. 0320.v1. 

Arora SK, Naqvi N, Alam A, Ahmad J, Alsati BS, Sheikh JA, Kumar P, Mitra DK, Rahman SA, Hasnain SE, Ehtesham NZ (2020) Mycobacterium smegmatis bacteria expressing Mycobacterium tuberculosis-specific Rv1954A induce macrophage activation and modulate the immune response Frontiers in  Cellular and Infection Microbiology 2020; 10:564565.  

Singh J, Kar S, Hasnain SE and Ganguly S. Homology modelling and molecular docking predicts ORF8 protein of SARS-CoV-2 binding to human complement C3b: A possible strategy for complement evasion. bioRxiv, 2020, doi:  

Singh J, Ehtesham NZ and Hasnain SE. Two parallel pandemics: the challenges faced by countries with COVID-19 and TB. International Journal of Tuberculosis and Lung Disease. 2020;24(12):1319-1320.  

Ehtesham NZ, Samal J, Ahmad F, Arish M, Naz F, Alam A, Agrawal U, Hasnain SE. Will BCG immunization arrest COVID-19 pandemic?  Indian Journal of Medical Research. 2020;152(1 & 2):16-20.

Sharma T, Grover S, Arora N, P Manjunath, Ehtesham NZ, Hasnain SE. PGRS domain of Rv0297 of Mycobacterium tuberculosis is involved in modulation of macrophage functions to favor bacterial persistence.  Frontiers in Cellular and Infection Microbiology 2020; 10:451.

Ramos J, Yoo C, Felty Q, Gong Z, Liuzzi JP, Poppiti R, Thakur IS, Goel R, Vaid AK, Komotar RJ, Ehtesham NZ, Hasnain SE, Roy D. Sensitivity to differential NRF1 gene signatures contributes to breast cancer disparities.  Journal of Cancer Research and Clinical Oncology. 2020;146(11):2777-2815.

Blundell T, Gupta MN, Hasnain SE. Intrinsic disorder in proteins: Relevance to protein assemblies, drug design and host-pathogen interactions. Progress Biophysics & Molecular Biology 2020; 156:34-42.

Bhawe K, Felty Q, Yoo C, Ehtesham NZ, Hasnain SE, Singh VP, Mohapatra I, Roy D. Nuclear Respiratory Factor 1 (NRF1) transcriptional activity-driven gene signature association with severity of astrocytoma and poor prognosis of glioblastoma. Molecular Neurobiology 2020;57(9):3827-3845.

Gupta MN, Alam A, Hasnain SE. Protein promiscuity in drug discovery, drug-repurposing and antibiotic resistance. Biochimie2020; 175: 50-57.

Singh H, Singh J, Khubaib M, Jamal S, Sheikh JA, Kohli S, Hasnain SE, Rahman SA. Mapping the genomic landscape and diversity of COVID-19 based on >3950 clinical isolates of SARS-CoV-2: Likely origin and transmission dynamics of isolates sequenced in India. Indian Journal of Medical Research 2020;151:474-478.

Sheikh JA, Singh J, Singh H, Jamal S, Khubaib M, Kohli S, Dobrint U, Rahman SA, Ehtesham NZ, Hasnain SE. Emerging genetic diversity among clinical isolates of SARS-CoV-2: Lessons for today. Infection Genetics and Evolution 2020;84:104330.

Arora SK, Alam A, Naqvi N, Ahmad J, Sheikh JA, Rahman SA, Hasnain SE, Ehtesham NZ. Immunodominant Mycobacterium tuberculosis protein Rv1507A elicits Th1 response and modulates host macrophage effector functions. Frontiers in Immunology 2020; 11:1199.

Chakaya JM, Marais B, du Cros P, Ntoumi F, Mfinanga S, Kapata N, Hasnain SE, Nathavitharana R, Zumla A. Programmatic versus personalised approaches to managing the global epidemic of multidrug-resistant tuberculosis. Lancet Respiratory Medicine 2020;8(4):334-335.

Sironi M, Hasnain SE, Rosenthal B, Phan T, Luciani F, Shaw MA, Sallum MA, Mirhashemi ME, Morand S, Gonzalez-Candelas. SARS-CoV-2 and COVID-19: A Genetic, epidemiological, and evolutionary perspective. Infection Genetics and Evolution 2020; 84:104384.

Haq A, Hasnain SE, Razzaque MS. Diverse functions of vitamin D in health and disease. Journal of Steroid Biochemistry and Molecular Biology 2020:105668.

Jamal S, Khubaib M, Gangwar R, Grover S, Grover A, Hasnain SE. Artificial Intelligence and Machine Learning based prediction of resistant and susceptible mutations in Mycobacterium tuberculosis. Scientific Reports 2020;10(1):5487.

Sheikh JA, Ehtesham NZ, Hasnain SE. Revisiting BCG to control tuberculosis: mucosal delivery and delipidation? Lancet Infectious Diseases 2020; 20(3):272-273.


Ahmad J, Khubaib M, Sheikh JA, Pancsa R, Kumar S, Srinivasan A, Babu MM, Hasnain SE, Ehtesham NZ. Disorder-to-order transition in PE-PPE proteins of Mycobacterium tuberculosis augments the pro-pathogen immune response. FEBS Open Biology 2020;10(1):70-85.

Arora SK, Alam A, Ahmad J, Naqvi N, Hasnain SE, Ehtesham NZ. Role of Mycobacterium tuberculosis expressing unique protein Rv000B in immune modulation of host cell machinery. Journal of Immunology 2019; 202 (1 Supplement) 120.7.

Pandey V, Singh P, Singh S, Arora N, Quadir N, Singh S, Das A, Dudeja M, Kapur P, Ehtesham NZ, Elangovan R, Hasnain SE. SeeTB: A novel alternative to sputum smear microscopy to diagnose tuberculosis in high burden countries. Scientific Reports 2019;9(1):16371.

Gupta MN, Pandey S, Ehtesham NZ, Hasnain SE. Medical implications of protein moonlighting. Indian Journal of Medical Research 2019;149(3):322-325.

Kumar A, Alam A, Grover S, Pandey S, Tripathi D, Kumari M, Rani M, Singh A, Akhter Y, Ehtesham NZ, Hasnain SE. Peptidyl-prolyl isomerase-B is involved in Mycobacterium tuberculosis biofilm formation and a generic target for drug repurposing-based intervention. npj Biofilms Microbiomes 2019; 5:3.

Sabeeha, Hasnain SE. Forensic Epigenetic Analysis: The Path Ahead. Medical Principles and Practice 2019;28(4):301-308.


Sharma A, Saqib M, Sheikh JA, Ehtesham NZ, Bhaskar S, Chaudhuri TK, Hasnain SE. Mycobacterium indicus pranii protein MIP_05962 induces Th1 cell mediated immune response in mice. International Journal of Medical Microbiology 2018;308(8):1000-1008.

Grover S, Sharma T, Singh Y, Kohli S, P M, Singh A, Semmler T, Wieler LH, Tedin K, Ehtesham NZ, Hasnain SE. The PGRS Domain of Mycobacterium tuberculosis PE_PGRS Protein Rv0297 Is Involved in Endoplasmic Reticulum Stress-Mediated Apoptosis through Toll-Like Receptor 4. mBio. 2018;9(3).

Battu S, Afroz S, Giddaluru J, Naz S, Huang W, Khumukcham SS, Khan RA, Bhat SY, Qureshi IA, Manavathi B, Khan AA, August A, Hasnain SE, Khan N. Amino acid starvation sensing dampens IL-1β production by activating riboclustering and autophagy. PLoS Biology. 2018;16(4):e2005317.

Ahmad J, Farhana A, Pancsa R, Arora SK, Srinivasan A, Tyagi AK, Babu MM, Ehtesham NZ, Hasnain SE. Contrasting function of structured N-terminal and unstructured C-terminal segments of Mycobacterium tuberculosis PPE37 protein. mBio. 2018;9(1).

Kumar A, Alam A, Tripathi D, Rani M, Khatoon H, Pandey S, Ehtesham NZ, Hasnain SE. Protein adaptations in extremophiles: An insight into extremophilic connection of mycobacterial proteome. Seminar in Cellular and Developmental Biology. 2018;84:147-157.

Ehtesham NZ, Ahmad J, Farhan A, Khubaib M, Kaur S, Pancsa R, Srinivasan A, Kumar S, Babu M, Hasnain SE. Intrinsically disordered regions/proteins compensate for genomic economization In Mycobacterium tuberculosis. FASEB Journal 2018; 32 (1).


Kumar A, Alam A, Rani M, Ehtesham NZ, Hasnain SE. Biofilms: Survival and defense strategy for pathogens. International Journal of Medical Microbiology 2017;307(8):481-489.

Kumar A, Rani M, Ehtesham NZ, Hasnain SE. Commentary: Modification of Host Responses by Mycobacteria. Frontiers in Immunology 2017; 8:466.

Sharma A, Equbal MJ, Pandey S, Sheikh JA, Ehtesham NZ, Hasnain SE, Chaudhuri TK. Immunodominant protein MIP_05962 from Mycobacterium indicus pranii displays chaperone activity. The FEBS Journal 2017;284(9):1338-1354.

Pandey S, Tripathi D, Khubaib M, Kumar A, Sheikh JA, Sumanlatha G, Ehtesham NZ, Hasnain SE. Mycobacterium tuberculosis Peptidyl-Prolyl Isomerases are immunogenic, alter cytokine profile and aid in intracellular survival. Frontiers in Cellular Infection Microbiology 2017;7:38.

Bhuwan M, Suragani M, Ehtesham NZ and Hasnain SE. Aggregation prevention assay for chaperone activity of proteins using spectroflurometry. Bio-Protocol 2017; Vol 7, Iss 2, 1/20/2017.


Khubaib M, Sheikh JA, Pandey S, Srikanth B, Bhuwan M, Khan N, Hasnain SE, Ehtesham NZ. Mycobacterium tuberculosis co-operonic PE32/PPE65 proteins alter host immune responses by hampering Th1 response. Frontiers in Microbiology 2016;7:719.

Grover S, Gupta P, Kahlon PS, Goyal S, Grover A, Dalal K, Sabeeha, Ehtesham NZ, Hasnain SE. Analyses of methyltransferases across the pathogenicity spectrum of different mycobacterial species point to an extremophile connection. Molecular Biosystems 2016;12(5):1615-25.

Pandey S, Sharma A, Tripathi D, Kumar A, Khubaib M, Bhuwan M, Chaudhuri TK, Hasnain SE, Ehtesham NZ. Mycobacterium tuberculosis Peptidyl-Prolyl Isomerases also exhibit chaperone like activity in-vitro and in-vivo. PLoS ONE 2016;11(3):e0150288.

Bhuwan M, Arora N, Sharma A, Khubaib M, Pandey S, Chaudhuri TK, Hasnain SE, Ehtesham NZ. Interaction of Mycobacterium tuberculosis virulence factor RipA with chaperone MoxR1 is required for transport through the TAT Secretion System. mBio 2016;7(2):e02259.


Arish M, Husein A, Kashif M, Sandhu P, Hasnain SE, Akhter Y, Rub A. Orchestration of membrane receptor signaling by membrane lipids. Biochimie 2015;113:111-24.

Rahman SA, Singh Y, Kohli S, Ahmad J, Ehtesham NZ, Tyagi AK, Hasnain SE. “Mycobacterium indicus pranii” is a strain of Mycobacterium intracellulare”: “M. indicus pranii” is a distinct strain, not derived from M. intracellulare, and is an organism at an evolutionary transition point between a fast grower and slow grower. mBio 2015;6(2):e00352-15.

Kohli S, Singh Y, Sowpati DT, Ehtesham NZ, Dobrindt U, Hacker J, Hasnain SE. Human mesenchymal stem cells: New sojourn of bacterial pathogens. International Journal of  Medical Microbiology 2015;305(3):322-6.

Parsa K, Hasnain SE. Proteomics of multidrug resistant Mycobacterium tuberculosis clinical isolates: a peep show on mechanism of drug resistance & perhaps more. Indian Journal of Medical Research 2015;141(1):8-9.

Hasnain SE, O’Toole RF, Grover S, Ehtesham NZ. Whole genome sequencing: a new paradigm in the surveillance and control of human tuberculosis. Tuberculosis (Edinb). 2015;95(2):91-4.

Kumar N, Mariappan V, Baddam R, Lankapalli AK, Shaik S, Goh KL, Loke MF, Perkins T, Benghezal M, Hasnain SE, Vadivelu J, Marshall BJ, Ahmed N. Comparative genomic analysis of Helicobacter pylori from Malaysia identifies three distinct lineages suggestive of differential evolution. Nucleic Acids Research 2015;43(1):324-35.

Kohli S, Singh Y, Ehtesham NZ, Hasnain SE. Leprosy immunomodulatory Mycobacterium indicus pranii: Biochemical and molecular genetic features render it a distinct species. Proceedings of the Ranbaxy Symposium on Leprosy, Ranbaxy Science Foundation, India 2015.


Rahman SA, Singh Y, Kohli S, Ahmad J, Ehtesham NZ, Tyagi AK, Hasnain SE. Comparative analyses of nonpathogenic, opportunistic, and totally pathogenic mycobacteria reveal genomic and biochemical variabilities and highlight the survival attributes of Mycobacterium tuberculosis. mBio2014;5(6):e02020.

Tundup S, Mohareer K, Hasnain SE. Mycobacterium tuberculosis PE25/PPE41 protein complex induces necrosis in macrophages: Role in virulence and disease reactivation? FEBS Open Bio. 2014;4:822-8.

Singh Y, Hasnain SE. Holobionts: emerging strategy for interventions against infectious diseases, metabolic disorders & cancer. Indian Journal of Medical Research 2014;140(1):11-4.

Singh Y, Kohli S, Sowpati DT, Rahman SA, Tyagi AK, Hasnain SE. Gene cooption in mycobacteria and search for virulence attributes: comparative proteomic analyses of Mycobacterium tuberculosis, Mycobacterium indicus pranii and other mycobacteria. International Journal of Medical  Microbiology 2014;304(5-6):742-8.

Rani PS, Doddam SN, Agrawal S, Hasnain SE, Sechi LA, Kumar A, Ahmed N. Mycobacterium avium subsp. paratuberculosis is not discerned in diabetes mellitus patients in Hyderabad, India. International Journal of  Medical  Microbiology 2014;304(5-6):620-5.

Alamuru NP, Behera S, Butchar JP, Tridandapani S, Kaimal Suraj S, Babu PP, Hasnain SE, Ehtesham NZ, Parsa KV. A novel immunomodulatory function of PHLPP1: inhibition of iNOS via attenuation of STAT1 ser727 phosphorylation in mouse macrophages. Journal of  Leukocyte Biology 2014;95(5):775-783.


Kumar A, Lewin A, Rani PS, Qureshi IA, Devi S, Majid M, Kamal E, Marek S, Hasnain SE, Ahmed N. Dormancy Associated Translation Inhibitor (DATIN/Rv0079) of Mycobacterium tuberculosis interacts with TLR2 and induces proinflammatory cytokine expression. Cytokine. 2013;64(1):258-64.

Singh Y, Ahmad J, Musarrat J, Ehtesham NZ, Hasnain SE. Emerging importance of holobionts in evolution and in probiotics. Gut Pathogens 2013;5(1):12.

Ahmad J, Hasnain SE, Siddiqui MA, Ahamed M, Musarrat J, Al-Khedhairy AA. MicroRNA in carcinogenesis & cancer diagnostics: a new paradigm. Indian Journal of Medical Research 2013;137(4):680-94.

Tyagi AK, Saini V, Hasnain SE. Response to Dr. Alexander’s letter is as follows. Nucleic Acids Research 2013; 40: 10832.

Mohareer K, Sahdev S, Hasnain SE. Spodoptera frugiperda FKBP-46 is a consensus p53 motif binding protein. Journal of Cellular Biochemistry 2013;114(4):899-907.


Saini V, Raghuvanshi S, Khurana JP, Ahmed N, Hasnain SE, Tyagi AK, Tyagi AK. Massive gene acquisitions in Mycobacterium indicus pranii provide a perspective on mycobacterial evolution. Nucleic Acids Research 2012;40(21):10832-50.

Kohli S, Singh Y, Sharma K, Mittal A, Ehtesham NZ, Hasnain SE. Comparative genomic and proteomic analyses of PE/PPE multigene family of Mycobacterium tuberculosis H₃₇Rv and H₃₇Ra reveal novel and interesting differences with implications in virulence. Nucleic Acids Research 2012;40(15):7113-22.

Kumar A, Majid M, Kunisch R, Rani PS, Qureshi IA, Lewin A, Hasnain SE, Ahmed N. Mycobacterium tuberculosis DosR regulon gene Rv0079 encodes a putative, ‘dormancy associated translation inhibitor (DATIN)’. PLoS ONE 2012; 7(6):e38709.

Hasnain SE, Friedrich B, Mettenleiter T, Dobrindt U, Hacker J. Climate change and infectious diseases–impact of global warming and climate change on infectious diseases: myth or reality? International Journal of Medical Microbiology. 2012;302(1):1-3.

Ahmed N, Devi SH, Tenguria S, Majid M, Rahman SA, Hasnain SE.  Genomic fluidity of the human gastric pathogen Helicobacter pylori, In: Genome Plasticity and Infectious Diseases, (Ed: Dobrindt U) Publisher American Society for Microbiology, USA 2012; DOI: 10.1128/9781555817213.

Akhter Y, Ehebauer MT, Mukhopadhyay S, Hasnain SE. The PE/PPE multigene family codes for virulence factors and is a possible source of mycobacterial antigenic variation: perhaps more? Biochimie  2012;94(1):110-6.


Mohareer K, Sahdev S, Hasnain SE. Baculovirus p35 gene is oppositely regulated by P53 and AP-1 like factors in Spodoptera frugiperda. Biochemical and Biophysical Research Communications 2011;414(4): 688-93.

Suragani M, Rasheedi S, Hasnain SE, Ehtesham NZ. The translation initiation factor, PeIF5B, from Pisum sativum displays chaperone activity. Biochemical and Biophysical Research Communications 2011;414(2):390-6.

Sharadamma N, Khan K, Kumar S, Patil KN, Hasnain SE, Muniyappa K. Synergy between the N-terminal and C-terminal domains of Mycobacterium tuberculosis HupB is essential for high-affinity binding, DNA supercoiling and inhibition of RecA-promoted strand exchange. FEBS Journal 2011;278(18):3447-62.

Banerjee S, Mohareer K, Hasnain SE. Tuberculosis related immune complications: A new dilemma in disease management, In: Biotechnology for Sustainable Development (Eds Hasnain SE, Rashmi, Jha B, Sharan RN). 2011, Tata McGraw Hill Publishers, New Delhi.

Ehtesham NZ, Nasiruddin M, Alvi A, Kumar BK, Ahmed N, Peri S, Murthy KJ, Hasnain SE. Treatment end point determinants for pulmonary tuberculosis: human resistin as a surrogate biomarker. Tuberculosis (Edinb.) 2011;91(4):293-9.

Ahmed N, Hasnain SE. Molecular epidemiology of tuberculosis in India: moving forward with a systems biology approach. Tuberculosis (Edinb.) 2011;91(5):407-13.

Banerjee S, Farhana A, Ehtesham NZ, Hasnain SE. Iron acquisition, assimilation and regulation in mycobacteria. Infection Genetics and Evolution 2011;11(5):825-38.

Mohareer K, Tundup S, Hasnain SE. Transcriptional regulation of Mycobacterium tuberculosis PE/PPE genes: a molecular switch to virulence? Journal of  Molecular Microbiology and Biotechnology 2011;21(3-4):97-109.

Thomas SK, Iravatham CC, Moni BH, Kumar A, Archana BV, Majid M, Priyadarshini Y, Rani PS, Valluri V, Hasnain SE, Ahmed N. Modern and ancestral genotypes of Mycobacterium tuberculosis from Andhra Pradesh, India. PLoS ONE 2011;6(11):e27584.

Alvi A, Ansari SA, Ehtesham NZ, Rizwan M, Devi S, Sechi LA, Qureshi IA, Hasnain SE, Ahmed N. Concurrent proinflammatory and apoptotic activity of a Helicobacter pylori protein (HP986) points to its role in chronic persistence. PLoS ONE 2011;6(7).

Hasnain SE, Banerjee S, Ehtesham NZ. Translating advances in genomic research into clinical practice: the challenges ahead. Medical Principles and  Practices 2011;20(4):392-4.

Hasnain SE. A link between mitochondrial DNA haplogroup and ischemia. Medical Principles and Practices 2011;20(3):201-2


Rasheedi S, Suragani M, Haq SK, Sachchidanand, Bhardwaj R, Hasnain SE, Ehtesham NZ. Expression, purification and ligand binding properties of the recombinant translation initiation factor (PeIF5B) from Pisum sativum. Molecular Cellular Biochemistry 2010;344(1-2):33-41.

Kumar S, Sardesai AA, Basu D, Muniyappa K, Hasnain SE. DNA clasping by mycobacterial HU: the C-terminal region of HupB mediates increased specificityof DNA binding. PLoS ONE 2010;5(9):e12551.

Sai Priya VH, Latha GS, Hasnain SE, Murthy KJ, Valluri VL. Enhanced T cell responsiveness to Mycobacterium bovis BCG r32-kDa Ag correlates with successful anti-tuberculosis treatment in humans. Cytokine 2010;52(3):190-3.

Singh AK, Battu A, Mohareer K, Hasnain SE, Ehtesham NZ. Transcription of human resistin gene involves an interaction of Sp1 with peroxisome proliferator-activating receptor gamma (PPARgamma). PLoS ONE 2010;5(3):e9912.

Sahdev S, Saini KS, Hasnain SE. Baculovirus P35 protein: an overview of its applications across multiple therapeutic and biotechnological arenas. Biotechnology Progress 2010;26(2):301-12.

Bashir N, Kounsar F, Mukhopadhyay S, Hasnain SE. Mycobacterium tuberculosis conserved hypothetical protein rRv2626c modulates macrophage effector functions. Immunology 2010;130(1):34-45.

Kumar P, Joshi DC, Akif M, Akhter Y, Hasnain SE, Mande SC. Mapping conformational transitions in cyclic AMP receptor protein: crystal structure and normal-mode analysis of Mycobacterium tuberculosis apo-cAMP receptor protein.   Biophysical Journal. 2010;98(2):305-14.

Rasheedi S, Suragani M, Haq SK, Ghosh S, Ehtesham NZ, Hasnain SE. Characterization of LEF4 ligand binding property and its role as part of baculoviral transcription machinery. Molecular and Cellular  Biochemistry 2010;333(1-2):83-9.


Saini V, Raghuvanshi S, Talwar GP, Ahmed N, Khurana JP, Hasnain SE, Tyagi AK, Tyagi AK. Polyphasic taxonomic analysis establishes Mycobacterium indicus pranii as a distinct species. PLoS ONE 2009;4(7):e6263.

Rasheedi S, Suragani M, Haq SK, Ghosh S, Ehtesham NZ, Hasnain SE. Biophysical characterization and unfolding of LEF4 factor of RNA polymerase from AcNPV. Biopolymers 2009;91(7):574-82.

Nair S, Ramaswamy PA, Ghosh S, Joshi DC, Pathak N, Siddiqui I, Sharma P, Hasnain SE, Mande SC, Mukhopadhyay S. The PPE18 of Mycobacterium tuberculosis interacts with TLR2 and activates IL-10 induction in macrophage. Journal of  Immunology 2009;183(10):6269-81.

Ahmed N, Sechi LA, Megraud F, Hasnain SE. Gut Pathogens: enteric health at the interface of changing microbiology. Gut Pathogen 2009;1(1):1.

Kumar MS, Ramachandran A, Hasnain SE, Bashyam MD. Octamer and heat shock elements regulate transcription from the AcMNPV polyhedrin gene promoter. Archives of Virology 2009; 154(3) :445-56.

Rosu V, Ahmed N, Paccagnini D, Gerlach G, Fadda G, Hasnain SE, Zanetti S, Sechi LA. Specific immunoassays confirm association of Mycobacterium avium Subsp. paratuberculosis with type-1 but not type-2 diabetes mellitus. PLoS ONE  2009;4(2):e4386

Kumar S, Farhana A, Hasnain SE. In-vitro helix opening of M. tuberculosis oriC by DnaA occurs at precise location and is inhibited by IciA like protein. PLoS ONE 2009;4(1):e4139.

Sai Priya VH, Anuradha B, Latha Gaddam S, Hasnain SE, Murthy KJ, Valluri VL. In vitro levels of interleukin 10 (IL-10) and IL-12 in response to a recombinant 32-kilodalton antigen of Mycobacterium bovis BCG after treatment for tuberculosis. Clinical Vaccine Immunology 2009;16(1):111-5.

Ahmed N, Ehtesham NZ, Hasnain SE. Ancestral Mycobacterium tuberculosis genotypes in India: implications for TB control programmes. Infection Genetics and Evolution 2009;9(1):142-6.


Farhana A, Kumar S, Rathore SS, Ghosh PC, Ehtesham NZ, Tyagi AK, Hasnain SE. Mechanistic insights into a novel exporter-importer system of Mycobacterium tuberculosis unravel its role in trafficking of iron. PLoS ONE 2008;3(5):e2087.

Ahmed N, Dobrindt U, Hacker J, Hasnain SE. Genomic fluidity and pathogenic bacteria: applications in diagnostics, epidemiology and intervention. Nature Reviews Microbiology 2008;6(5):387-94.

Khan N, Alam K, Mande SC, Valluri VL, Hasnain SE, Mukhopadhyay S. Mycobacterium tuberculosis heat shock protein 60 modulates immune response to PPD by manipulating the surface expression of TLR2 on macrophages. Cellular Microbiology 2008;10(8):1711-22.

Demuth A, Aharonowitz Y, Bachmann TT, Blum-Oehler G, Buchrieser C, Covacci A, Dobrindt U, Emödy L, van der Ende A, Ewbank J, Fernández LA, Frosch M, García-Del Portillo F, Gilmore MS, Glaser P, Goebel W, Hasnain SE, Heesemann J, Islam K, Korhonen T, Maiden M, Meyer TF, Montecucco C, Oswald E, Parkhill J, Pucciarelli MG, Ron E, Svanborg C, Uhlin BE, Wai SN, Wehland J, Hacker J. Pathogenomics: an updated European Research Agenda. Infection Genetics and Evolution 2008;8(3):386-93.

Tundup S, Pathak N, Ramanadham M, Mukhopadhyay S, Murthy KJ, Ehtesham NZ, Hasnain SE. The co-operonic PE25/PPE41 protein complex of Mycobacterium tuberculosis elicits increased humoral and cell mediated immune response. PLoS ONE. 2008;3(10):e3586.

Akhter Y, Yellaboina S, Farhana A, Ranjan A, Ahmed N, Hasnain SE. Genome scale portrait of cAMP-receptor protein (CRP) regulons in mycobacteria points to their role in pathogenesis. Gene 2008;407(1-2):148-58.


Ahmed N, Saini V, Raghuvanshi S, Khurana JP, Tyagi AK, Tyagi AK, Hasnain SE. Molecular analysis of a leprosy immunotherapeutic bacillus provides insights into Mycobacterium evolution. PLoS ONE 2007;2(10):e968.

Akhter Y, Tundup S, Hasnain SE. Novel biochemical properties of a CRP/FNR family transcription factor from Mycobacterium tuberculosis. International Journal of Medical Microbiology 2007;297(6):451-7.

Duggirala A, Kenchappa P, Sharma S, Peeters JK, Ahmed N, Garg P, Das T, Hasnain SE. High-resolution genome profiling differentiated Staphylococcus epidermidis isolated from patients with ocular infections and normal individuals. Investigative Ophthalmology and Visual Science 2007;48(7):3239-45.

Rasheedi S, Ghosh S, Suragani M, Tuteja N, Sopory SK, Hasnain SE, Ehtesham NZ. Pisum sativum contains a factor with strong homology to eIF5B. Gene 2007;399(2):144-51.

Banerjee S, Nandyala AK, Raviprasad P, Ahmed N, Hasnain SE. Iron-dependent RNA-binding activity of Mycobacterium tuberculosis aconitase. Journal of Bacteriology 2007;189(11):4046-52.

Khan N, Ghousunnissa S, Jegadeeswaran SM, Thiagarajan D, Hasnain SE, Anti-B7-1/B7-2 antibody elicits innate-effector responses in macrophages through NF-kappaB-dependent pathway. International Immunology 2007;19(4):477-86.

Vidyasagar M, Hasnain SE, Mande SC, Nagarajaram HA, Ranjan A, Acharya MS, Anwaruddin, Arun SK, Gyanrajkumar, Kumar D, Priya S, Ranjan S, Reddi BR, Seshadri J, Kumar SP, Swaminathan S, Umadevi P, Vindal V. Biosuite: A comprehensive bioinformatics software package (A unique industry-academia collaboration). Current Science 2007;92:29-38.

Mukhopadhyay S, Nair S, Hasnain SE. Nitric oxide friendly rivalry in tuberculosis, Current Signal Transduction Therapy, 2007;2 (2):121-128.

Rasheedi S, Ramachandran A, Ehtesham NZ, Hasnain SE. Biochemical characterization of Sf9 Sp-family-like protein factors reveals interesting features. Archives of Virology 2007;152(10):1819-28.

Boddupalli CS, Ghosh S, Rahim SS, Nair S, Ehtesham NZ, Hasnain SE, Mukhopadhyay S. Nitric oxide inhibits interleukin-12 p40 through p38 MAPK-mediated regulation of calmodulin and c-rel. Free Radical Biology and Medicine 2007;42(5):686-97.


Hasnain SE. Crises in the Universities: Increasing funding gap between Universities and National Laboratories/Scientific Research Institutions – Some Solutions. Current Science 2006;91:1591-1592.

Achary MS, Reddy AB, Chakrabarti S, Panicker SG, Mandal AK, Ahmed N, Balasubramanian D, Hasnain SE, Nagarajaram HA. Disease-causing mutations in proteins: structural analysis of the CYP1B1 mutations causing primary congenital glaucoma in humans. Biophysical Journal 2006;91(12):4329-39.

Gutierrez MC, Ahmed N, Willery E, Narayanan S, Hasnain SE, Chauhan DS, Katoch VM, Vincent V, Locht C, Supply P. Predominance of ancestral lineages of Mycobacterium tuberculosis in India. Emerging Infectious Diseases 2006;12(9):1367-74.

Akif M, Akhter Y, Hasnain SE, Mande SC. Crystallization and preliminary X-ray crystallographic studies of Mycobacterium tuberculosis CRP/FNR family transcription regulator. Acta Crystallographica Section F Structural Biology Communications 2006;62(Pt 9):873-5.

Qamra R, Prakash P, Aruna B, Hasnain SE, Mande SC. The 2.15 A crystal structure of Mycobacterium tuberculosis chorismate mutase reveals an unexpected gene duplication and suggests a role in host-pathogen interactions. Biochemistry 2006;45(23):6997-7005.

Kashyap VK, Guha S, Sitalaximi T, Bindu GH, Hasnain SE, Trivedi R. Genetic structure of Indian populations based on fifteen autosomal microsatellite loci. BMC Genetics 2006;7:28.

Gupta AK, Chauhan DS, Srivastava K, Das R, Batra S, Mittal M, Goswami P, Singhal N, Sharma VD, Venkatesan K, Hasnain SE, Katoch VM. Estimation of efflux mediated multi-drug resistance and its correlation with expression levels of two major efflux pumps in mycobacteria. Journal of  Communicable Diseases 2006;38(3):246-54.

Tundup S, Akhter Y, Thiagarajan D, Hasnain SE. Clusters of PE and PPE genes of Mycobacterium tuberculosis are organized in operons: evidence that PE Rv2431c is co-transcribed with PPE Rv2430c and their gene products interact with each other. FEBS Letters 2006;580(5):1285-93.

Kenchappa P, Duggirala A, Ahmed N, Pathengay A, Das T, Hasnain SE, Sharma S. Fluorescent amplified fragment length polymorphism (FAFLP) genotyping demonstrates the role of biofilm-producing methicillin-resistant periocular Staphylococcus epidermidis strains in postoperative endophthalmitis. BMC Ophthalmology 2006;6:1.

Kazim SN, Sarin SK, Sharma BC, Khan LA, Hasnain SE. Characterization of naturally occurring and Lamivudine-induced surface gene mutants of hepatitis B virus in patients with chronic hepatitis B in India. Intervirology2006;49(3):152-60.

Khan N, Rahim SS, Boddupalli CS, Ghousunnissa S, Padma S, Pathak N, Thiagarajan D, Hasnain SE, Mukhopadhyay S. Hydrogen peroxide inhibits IL-12 p40 induction in macrophages by inhibiting c-rel translocation to the nucleus through activation of calmodulin protein. Blood 2006; 107 (4), 1513-20.

Rao KR, Ahmed N, Srinivas S, Sechi LA, Hasnain SE. Rapid identification of Mycobacterium tuberculosis Beijing genotypes on the basis of the mycobacterial interspersed repetitive unit locus 26 signature. Journal of  Clinical Microbiology 2006;44(1):274-7.

Hasnain SE (2006) Biomedical Research in India can have a global impact Current Science 2006;91: 5-6.


Kenchappa P, Sangwan VS, Ah N, Rao KR, Pathengay A, Mathai A, Mansoori T, Das T, Hasnain SE, Sharma S. High-resolution genotyping of Pseudomonas aeruginosa strains linked to acute post cataract surgery endophthalmitis outbreaks in India. Annals in  Clinical Microbiology and Antimicrobials. 2005;4:19.

Rao KR, Kauser F, Srinivas S, Zanetti S, Sechi LA, Ahmed N, Hasnain SE. Analysis of genomic downsizing on the basis of region-of-difference polymorphism profiling of Mycobacterium tuberculosis patient isolates reveals geographic partitioning. Journal of  Clinical Microbiology. 2005;43(12):5978-82.

Banerjee S, Nandyala A, Podili R, Katoch VM, Hasnain SE. Comparison of Mycobacterium tuberculosis isocitrate dehydrogenases (ICD-1 and ICD-2) reveals differences in coenzyme affinity, oligomeric state, pH tolerance and phylogenetic affiliation. BMC Biochemistry 2005;6:20.

Sah NK, Singh SN, Sahdev S, Banerji S, Jha V, Khan Z, Hasnain SE. Indian herb ‘Sanjeevani’ (Selaginella bryopteris) can promote growth and protect against heat shock and apoptotic activities of ultra violet and oxidative stress. Journal of  Biosciences. 2005;30(4):499-505.

Thakur V, Kazim SN, Guptan RC, Hasnain SE, Bartholomeusz A, Malhotra V, Sarin SK. Transmission of G145R mutant of HBV to an unrelated contact. Journal of Medical  Virology. 2005;76(1):40-6.

Qamra R, Prakash P, Aruna B, Hasnain SE, Mande SC. Crystallization and preliminary X-ray crystallographic studies of Mycobacterium tuberculosis chorismate mutase. Acta Crystallography Section F Structural Biology Crystal Communications 2005;61(Pt 5):473-5.

Kaur K, Reddy AB, Mukhopadhyay A, Mandal AK, Hasnain SE, Ray K, Thomas R, Balasubramanian D, Chakrabarti S. Myocilin gene implicated in primary congenital glaucoma. Clinical Genetics 2005;67(4):335-40.

Prakash P, Pathak N, Hasnain SE. pheA (Rv3838c) of Mycobacterium tuberculosis encodes an allosterically regulated monofunctional prephenate dehydratase that requires both catalytic and regulatory domains for optimum activity. Journal of Biological Chemistry 2005;280(21):20666-71.

Prakash P, Yellaboina S, Ranjan A, Hasnain SE. Computational prediction and experimental verification of novel IdeR binding sites in the upstream sequences of Mycobacterium tuberculosis open reading frames. Bioinformatics 2005;21(10): 2161-6.

Rahim SS, Khan N, Boddupalli CS, Hasnain SE, Mukhopadhyay S. Interleukin-10 (IL-10) mediated suppression of IL-12 production in RAW 264.7 cells also involves c-rel transcription factor. Immunology 2005;114(3):313-21.

Prakash P, Aruna B, Sardesai AA, Hasnain SE. Purified recombinant hypothetical protein coded by open reading frame Rv1885c of Mycobacterium tuberculosis exhibits a monofunctional AroQ class of periplasmic chorismate mutase activity. Journal of Biological Chemistry 2005;280(20):19641-8.

Chakrabarti S, Kaur K, Komatireddy S, Acharya M, Devi KR, Mukhopadhyay A, Mandal AK, Hasnain SE, Chandrasekhar G, Thomas R, Ray K. Gln48His is the prevalent myocilin mutation in primary open angle and primary congenital glaucoma phenotypes in India. Molecular Visions 2005;11:111-3.


Bashyam MD, Hasnain SE. The extracytoplasmic function sigma factors: role in bacterial pathogenesis. Infection Genetics and Evolution 2004;4(4):301-8

Ahmed N, Hasnain SE. Genomics of Mycobacterium tuberculosis: old threats & new trends. Indian  Journal of  Medical Research 2004;120(4):207-12

Reddy AB, Kaur K, Mandal AK, Panicker SG, Thomas R, Hasnain SE, Balasubramanian D, Chakrabarti S. Mutation spectrum of the CYP1B1 gene in Indian primary congenital glaucoma patients. Molecular Visions. 2004;10:696-702

Yellaboina S, Ranjan S, Chakhaiyar P, Hasnain SE, Ranjan A. Prediction of DtxR regulon: identification of binding sites and operons controlled by Diphtheria toxin repressor in Corynebacterium diphtheriae. BMC Microbiology 2004;4:38

Ghosh S, Rasheedi S, Rahim SS, Banerjee S, Choudhary RK, Chakhaiyar P, Ehtesham NZ, Mukhopadhyay S, Hasnain SE. Method for enhancing solubility of the expressed recombinant proteins in Escherichia coli. Biotechniques 2004;37(3):418, 420, 422-3

Hasnain SE, Ahmed N. Leptospirosis. Lancet Infectious Diseases 2004;4(9):543-544

Chakhaiyar P, Nagalakshmi Y, Aruna B, Murthy KJ, Katoch VM, Hasnain SE. Regions of high antigenicity within the hypothetical PPE major polymorphic tandem repeat open-reading frame, Rv2608, show a differential humoral response and a low T cell response in various categories of patients with tuberculosis. Journal of Infectious Diseases 2004;190(7):1237-44

Banerjee S, Nandyala A, Podili R, Katoch VM, Murthy KJ, Hasnain SE. Mycobacterium tuberculosis (Mtb) isocitrate dehydrogenases show strong B cell response and distinguish vaccinated controls from TB patients. Proceeding of National Academy of  Sciences, USA 2004;101(34):12652-7

Vijayachari P, Ahmed N, Sugunan AP, Ghousunnissa S, Rao KR, Hasnain SE, Sehgal SC. Use of fluorescent amplified fragment length polymorphism for molecular epidemiology of leptospirosis in India. Journal of  Clinical Microbiology. 2004;42(8):3575-80

Choudhary RK, Pullakhandam R, Ehtesham NZ, Hasnain SE. Expression and characterization of Rv2430c, a novel immunodominant antigen of Mycobacterium tuberculosis. Protein Expression Purification 2004;36(2):249-53

Ahmed N, Alam M, Rao KR, Kauser F, Kumar NA, Qazi NN, Sangal V, Sharma VD, Das R, Katoch VM, Murthy KJ, Suneetha S, Sharma SK, Sechi LA, Gilman RH, Hasnain SE. Molecular genotyping of a large, multicentric collection of tubercle bacilli indicates geographical partitioning of strain variation and has implications for global epidemiology of Mycobacterium tuberculosis. Journal of Clinical Microbiology 2004;42(7):3240-7

Chakhaiyar P, Hasnain SE. Defining the mandate of tuberculosis research in a postgenomic era. Medical  Principles and Practices 2004;13(4):177-84

Venkaiah B, Viswanathan P, Habib S, Hasnain SE. An additional copy of the homologous region (hr1) sequence in the Autographa californica multinucleocapsid polyhedrosis virus genome promotes hyperexpression of foreign genes. Biochemistry 2004;43(25):8143-51.

Mukhopadhyay S, Srivastava VM, Murthy PK, Hasnain SE. Poorer NF-kappa B signaling by microfilariae in macrophages from BALB/c mice affects their ability to produce cytotoxic levels of nitric oxide to kill microfilariae. FEBS Letters 2004;567(2-3):275-80.

Siddiqi N, Das R, Pathak N, Banerjee S, Ahmed N, Katoch VM, Hasnain SE. Mycobacterium tuberculosis isolate with a distinct genomic identity overexpresses a tap-like efflux pump. Infection 2004;32(2):109-11.

Panicker SG, Mandal AK, Reddy AB, Gothwal VK, Hasnain SE. Correlations of genotype with phenotype in Indian patients with primary congenital glaucoma. Investigative Ophthalmology and Visual Science 2004;45(4):1149-56.

Ahmed R, Kamra A, Hasnain SE. Fibroin silk proteins from the non-mulberry silkworm Philosamia ricini are biochemically and immunochemically distinct from those of the mulberry silkworm Bombyx mori. DNA and Cell Biology 2004;23(3):149-54.

Majeed AA, Ahmed N, Rao KR, Ghousunnissa S, Kauser F, Bose B, Nagarajaram HA, Katoch VM, Cousins DV, Sechi LA, Gilman RH, Hasnain SE. AmpliBASE MT: a Mycobacterium tuberculosis diversity knowledgebase. Bioinformatics 2004;20(6):989-92.


Aparna G, Bhuyan AK, Sahdev S, Hasnain SE, Kaufman RJ, Ramaiah KV. Stress-induced apoptosis in Spodoptera frugiperda (Sf9) cells: baculovirus p35 mitigates eIF2 alpha phosphorylation. Biochemistry 2003;42(51):15352-60.

Ali S, Hasnain SE. Genomics of the human Y-chromosome. 1. Association with male infertility. Gene 2003;321:25-37.

Choudhary RK, Mukhopadhyay S, Chakhaiyar P, Sharma N, Murthy KJ, Katoch VM, Hasnain SE. PPE antigen Rv2430c of Mycobacterium tuberculosis induces a strong B-cell response. Infection and Immunity 2003;71(11):6338-43.

Viswanathan P, Venkaiah B, Kumar MS, Rasheedi S, Vrati S, Bashyam MD, Hasnain SE. The homologous region sequence (hr1) of Autographa californica multinucleocapsid polyhedrosis virus can enhance transcription from non-baculoviral promoters in mammalian cells. Journal of  Biological Chemistry 2003;278(52): 52564-71.

Reddy AB, Panicker SG, Mandal AK, Hasnain SE, Balasubramanian D. Identification of R368H as a predominant CYP1B1 allele causing primary congenital glaucoma in Indian patients. Investigative  Ophthalmology and  Visual Science. 2003;44(10):4200-3.

Sahdev S, Taneja TK, Mohan M, Sah NK, Khar AK, Hasnain SE, Athar M. Baculoviral p35 inhibits oxidant-induced activation of mitochondrial apoptotic pathway. Biochemical and Biophysical Research Communications 2003;307(3):483-90.

Hasnain SE, Begum R, Ramaiah KV, Sahdev S, Shajil EM, Taneja TK, Mohan M, Athar M, Sah NK, Krishnaveni M. Host-pathogen interactions during apoptosis. Journal of Biosciences 2003;28(3):349-58.

Ahmed N, Caviedes L, Alam M, Rao KR, Sangal V, Sheen P, Gilman RH, Hasnain SE. Distinctiveness of Mycobacterium tuberculosis genotypes from humanimmunodeficiency virus type 1-seropositive and -seronegative patients in Lima, Peru. Journal of  Clinical Microbiology 2003;41(4):1712-6.

Bashyam MD, Hasnain SE. The human genome sequence: impact on health care. Indian  Journal of  Medical Research 2003;117:43-65.

Nagarajaram HA, Hasnain SE. Current status of post-genomics computational biology. Computing and Information Sciences: Recent Trends, Narosa Publishing House, New Delhi 2003, pp 295-315.

Ahmed N, Alam M, Abdul Majeed A, Asad Rahman S, Cataldi A, Cousins D, Hasnain SE. Genome sequence based, comparative analysis of the fluorescent amplified fragment length polymorphisms (FAFLP) of tubercle bacilli from seals provides molecular evidence for a new species within the Mycobacterium tuberculosis complex. Infection Genetics and  Evolution 2003;2(3):193-9.

Hasnain SE. Molecular epidemiology of infectious diseases: a case for increased surveillance. Bulletin of World Health Organisation. 2003;81(7):474.

Mohan M, Taneja TK, Sahdev S, Mohareer K, Begum R, Athar M, Sah NK, Hasnain SE. Antioxidants prevent UV-induced apoptosis by inhibiting mitochondrial cytochrome c release and caspase activation in Spodoptera frugiperda (Sf9) cells. Cell Biology International 2003;27(6):483-90.


Panicker SG, Sampath S, Mandal AK, Reddy AB, Ahmed N, Hasnain SE. Novel mutation in FOXC1 wing region causing Axenfeld-Rieger anomaly. Investigative  Ophthalmology and  Visual Science 2002;43(12):3613-6.

Wakil SM, Kazim SN, Khan LA, Raisuddin S, Parvez MK, Guptan RC, Thakur V, Hasnain SE, Sarin SK. Prevalence and profile of mutations associated with lamivudine therapy in Indian patients with chronic hepatitis B in the surface and polymerase genes of hepatitis B virus. Journal of Medical Virology2002;68(3):311-8.

Ghosh S, Parvez MK, Banerjee K, Sarin SK, Hasnain SE. Baculovirus as mammalian cell expression vector for gene therapy: an emerging strategy. Molecular Therapy 2002;6(1):5-11.

Ata-ur-Rasheed M, Vemuganti Gk, Honavar Sg, Ahmed N, Hasnain Se, Kannabiran C. Mutational analysis of the RB1 gene in Indian patients with retinoblastoma. Ophthalmic Genetics 2002;23(2):121-8.

Katoch B, Sebastian S, Sahdev S, Padh H, Hasnain SE, Begum R. Programmed cell death and its clinical implications. Indian  Journal of Experimental Biology 2002;40(5):513-24.

Panicker SG, Reddy AB, Mandal AK, Ahmed N, Nagarajaram HA, Hasnain SE, Balasubramanian D. Identification of novel mutations causing familial primary congenital glaucoma in Indian pedigrees Investigative Ophthalmology and  Visual Science 2002;43(5):1358-66.

Kazim SN, Wakil SM, Khan LA, Hasnain SE, Sarin SK. Vertical transmission of hepatitis B virus despite maternal lamivudine therapy. The Lancet2002;359(9316):1488-9.

Nagaraju J, Kathirvel M, Kumar RR, Siddiq EA, Hasnain SE. Genetic analysis of traditional and evolved Basmati and non-Basmati rice varieties by using fluorescence-based ISSR-PCR and SSR markers. Proceedings of  National Academy of  Science, USA 2002;99(9):5836-41.

Siddiqi N, Shamim M, Hussain S, Choudhary RK, Ahmed N, Prachee, Banerjee S, Savithri GR, Alam M, Pathak N, Amin A, Hanief M, Katoch VM, Sharma SK, Hasnain SE. Molecular characterization of multidrug-resistant isolates of Mycobacterium tuberculosis from patients in North India. Antimicrobial Agents and Chemotherapy 2002;46(2):443-50.

Ali S, Hasnain SE. Molecular dissection of the human Y-chromosome. Gene2002;283(1-2):1-10.


Hasnain SE. MEEGID-V: Fifth International Meeting on Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. Infection Genetics and Evolution 2001;1(2):167-70.

Siddiqi N, Shamim M, Amin A, Chauhan DS, Das R, Srivastava K, Singh D, Sharma VD, Katoch VM, Sharma SK, Hanief M, Hasnain SE. Typing of drug resistant isolates of Mycobacterium tuberculosis from India using the IS6110 element reveals substantive polymorphism. Infection Genetics and Evolution 2001;1(2):109-16.

Parvez MK, Thakur V, Kazim SN, Guptan RC, Hasnain SE, Sarin SK. Base-pair alterations in the epsilon-lower stem due to a novel double substitution in the precore gene of HBV-e negative variant were recovered by secondary mutations. Virus Genes 2001;23(3):315-20.

Kohli A, Gupta V, Krishnamurthy S, Hasnain SE, Prasad R. Specificity of drug transport mediated by CaMDR1: a major facilitator of Candida albicans. Journal of  Biosciences 2001;26(3):333-9.

Ramachandran A, Bashyam MD, Viswanathan P, Ghosh S, Kumar MS, Hasnain SE. The bountiful and baffling baculovirus: The story of polyhedrin transcription. Current Science 2001;81: 998-1010.

Hasnain SE. Impact of human genome sequencing on microbiology. Indian Journal of Medical Microbiology 2001;19(3):114-5.

Srinivas VR, Bachhawat-Sikder K, Habib S, Hasnain SE, Surolia A. Expression of winged bean basic agglutinin in Spodoptera frugiperda insect cell expression system. Bioscience Reports 2001;21(3):361-7.

Ramachandran A, Jain A, Arora P, Bashyam MD, Chatterjee U, Ghosh S, Parnaik VK, Hasnain SE. Novel Sp family-like transcription factors are present in adult insect cells and are involved in transcription from the polyhedrin gene initiator promoter. Journal of Biological Chemistry 2001;276(26):23440-9.


Sudhakar A, Ramachandran A, Ghosh S, Hasnain SE, Kaufman RJ, Ramaiah KV. Phosphorylation of serine 51 in initiation factor 2 alpha (eIF2 alpha) promotes complex formation between eIF2 alpha(P) and eIF2B and causes inhibition in the guanine nucleotide exchange activity of eIF2B. Biochemistry 2000;39(42):12929-38.

Raman LA, Siddiqi N, Shamim M, Deb M, Mehta G, Hasnain SE. Molecular characterization of Mycobacterium abscessus strains isolated from a hospital outbreak. Emerging Infectious Diseases 2000;6(5):561-2.

Kapoor D, Guptan RC, Wakil SM, Kazim SN, Kaul R, Agarwal SR, Raisuddin S, Hasnain SE, Sarin SK. Beneficial effects of lamivudine in hepatitis B virus-related decompensated cirrhosis. Journal of Hepatology 2000;33(2):308-12.

Bashyam MD, Ramachandran A, Ghosh S, Viswanathan P, Hasnain SE. Multiple regulatory circuits for transcription from the polyhedrin gene promoter of the Autographa californica multiple nucleocapsid nuclear polyhedrosis virus. Proceedings of  Indian National Science Academy 2000;B66 (2-3):83-96.

Sah NK, Taneja TK, Hasnain SE. Mitochondria can power cell to life and death. Resonance 2000: 74–84.

Rao GV, Hasnain SE. CDFD – A synthesis of Quality Service and Globally competitive Science. Asia Pacific Biotech News, Singapore 2000, 6: 114-117.

Shi YP, Das P, Holloway B, Udhayakumar V, Tongren JE, Candal F, Biswas S, Ahmad R, Hasnain SE, Lal AA. Development, expression, and murine testing of a multistage Plasmodium falciparum malaria vaccine candidate. Vaccine 2000;18(25):2902-14.

Habib S, Hasnain SE. Differential activity of two non-hr origins during replication of the baculovirus Autographa californica nuclear polyhedrosis virus genome. Journal of Virology 2000;74 (11):5182-9.

Misra A, Chattopadhyay P, Dinda AK, Sarkar C, Mahapatra AK, Hasnain SE, Sinha S. Extensive intra-tumor heterogeneity in primary human glial tumors as a result of locus non-specific genomic alterations. Journal of  Neurooncology 2000;48(1):1-12.


Sudhakar A, Krishnamoorthy T, Jain A, Chatterjee U, Hasnain SE, Kaufman RJ, Ramaiah KV. Serine 48 in initiation factor 2 alpha (eIF2 alpha) is required for high-affinity interaction between eIF2 alpha(P) and eIF2B. Biochemistry 1999;38(46):15398-405.

Puri N, Krishnamurthy S, Habib S, Hasnain SE, Goswami SK, Prasad R. CDR1, a multidrug resistance gene from Candida albicans, contains multiple regulatory domains in its promoter and the distal AP-1 element mediates its induction by miconazole. FEMS Microbiol Letters 1999;180(2):213-9.

Sah NK, Taneja TK, Pathak N, Begum R, Athar M, Hasnain SE. The baculovirus antiapoptotic p35 gene also functions via an oxidant-dependent pathway. Proceedings of  National Academy of  Science, USA 1999;96(9):4838-43.

Hasnain SE, Taneja TK, Sah NK, Mohan M, Pathak N, Sahdev S, Athar M, Totey SM, Begum R. In-vitro cultured Spodoptera frugiperda insect cells: Model for oxidative stress-induced apoptosis. Journal of  Biosciences 1999;24 (13–19).

Hasnain SE. Conservation, management and documentation of livestock genetic resources and biodiversity: A biotechnology perspective. Current Science 1999;77 No.9 (1154-1158).

Shi YP, Hasnain SE, Sacci JB, Holloway BP, Fujioka H, Kumar N, Wohlhueter R, Hoffman SL, Collins WE, Lal AA. Immunogenicity and in vitro protective efficacy of a recombinant multistage Plasmodium falciparum candidate vaccine. Proceedings of  National Academy of  Science, USA 1999;96(4):1615-20.


Ali S, Ansari S, Ehtesham NZ, Azfer MA, Homkar U, Gopal R, Hasnain SE. Analysis of the evolutionarily conserved repeat motifs in the genome of the highly endangered central Indian swamp deer Cervus duvauceli branderi. Gene 1998;223(1-2):361-7.

Ramani K, Hassan Q, Venkaiah B, Hasnain SE, Sarkar DP. Site-specific gene delivery in vivo through engineered Sendai viral envelopes. Proceedings of  National Academy of  Science, USA, 1998;95(20):11886-90.

Siddiqi N, Shamim M, Jain NK, Rattan A, Amin A, Katoch VM, Sharma SK, Hasnain SE. Molecular genetic analysis of multi-drug resistance in Indian isolates of Mycobacterium tuberculosis. Memorias Institute Oswaldo Cruz1998;93(5):589-94.

Ghosh S, Jain A, Mukherjee B, Habib S, Hasnain SE. The host factor polyhedrin promoter binding protein (PPBP) is involved in transcription from the baculovirus polyhedrin gene promoter. Jour Virol. 1998;72(9):7484-93.

Krishnamurthy S, Chatterjee U, Gupta V, Prasad R, Das P, Snehlata P, Hasnain SE, Prasad R. Deletion of transmembrane domain 12 of CDR1, a multidrug transporter from Candida albicans, leads to altered drug specificity: expression of a yeast multidrug transporter in baculovirus expression system. Yeast 1998;14(6):535-50.

Dil-Afroze, Misra A, Sulaiman IM, Sinha S, Sarkar C, Mahapatra AK, Hasnain SE. Genetic alterations in brain tumors identified by RAPD analysis. Gene 1998;206(1):45-8.


Raghu P, Habib S, Hasnain SE, Hasan G. Development of a functional assay for Ca2+ release activity of IP3R and expression of an IP3R gene fragment in the baculovirus-insect cell system. Gene 1997;190(1):151-6.

Hasnain SE, Jain A, Habib S, Ghosh S, Chatterji U, Ramachandran A, Das P, Venkaiah B, Pandey S, Liang B, Ranjan A, Natarajan K, Azim CA. Involvement of host factors in transcription from baculovirus very late promoters — a review. Gene 1997;190(1):113-8.

Sinha S, Dil-Afroze, Misra A, Sulaiman IM, Sarkar C, Mahapatra AK, Hasnain SE. Changes in brain tumor genome identified by RAPD analysis. The FASEB Journal 1997;11:2313.

Hasnain SE, Liljestrom P, and Roy P. Eukaryotic expression vector systems; biology and applications. Gene 1997;190.

Awasthi AK, Jha PK, Ranjan A, Hasnain SE. Monitoring recombinant baculovirus replication in Spodoptera litura (Lepidoptera: Noctuidae) larvae by using firefly luciferase gene as a reporter. Annals in Entomological Society USA 1997;90: 832.

Habib S, Hasnain SE. A bifunctional baculovirus homologous region (hr1) sequence: enhancer and origin of replication functions reside within the same sequence element. Current Science 1997;73: 658.

Talwar GP, Singh OM, Gupta SK, Hasnain SE, Pal R, Majumbar SS, Vrati S, Mukhopadhay A, Srinivasan J, Deshmukh U, Ganga S, Mandokhot A, Gupta A. The HSD-hCG vaccine prevents pregnancy in women: feasibility study of a reversible safe contraceptive vaccine. Journal of Reproductive Immunology. 1997; 37(2):153-60.


Joshi AR, Sinha S, Dil-Afroz, Sulaiman IM, Banerji AK, Hasnain SE. Alterations in brain tumor DNA detected by a fingerprinting probe. Indian Journal of  Biochemistry and Biophysics 1996;33(6):455-7.

Habib S, Hasnain SE. A 38-kDa host factor interacts with functionally important motifs within the Autographa californica multinucleocapsid nuclear polyhedrosis virus homologous region (hr1) DNA sequence. Journal of  Biological Chemistry 1996;271(45):28250-8.

Das A, Lal AA, Talwar GP, Hasnain SE, Sinha S. A one-step lysis procedure for 18S ribosomal RNA-based diagnosis of infection by Plasmodium species. Analytical Biochemistry 1996;241(2):262-4.

Raina A, Sulaiman IM, Ehtesham NZ, Das P, Ali S, Dogra TD, Hasnain SE. Characterization of a human alphoid satellite DNA sequence: potential use in assessing genetic diversity in Indian populations. Gene 1996;173(2):247-50.

Habib S, Pandey S, Chatterji U, Burma S, Ahmad R, Jain A, Hasnain SE. Bifunctionality of the AcMNPV homologous region sequence (hr1): enhancer and ori functions have different sequence requirements. DNA Cell Biology 1996;15(9):737-47.

Jain A, Hasnain SE. A 30-kDa host protein binds to two very-late baculovirus promoters. European Journal of Biochemistry. 1996;239 (2):384-90.

Sulaiman IM, Hasnain SE. Random amplified polymorphic DNA (RAPD) markers reveal genetic homogeneity in the endangered Himalayan species Meconopsis paniculata and M. simplicifolia. Theoretical and Applied Genetics 1996;93(1-2):91-6.

Das A, Lal A, Talwar GP, Hasnain SE, Sinha S. A one step lysis procedure for 18S rRNA based diagnosis of malaria. Analytical Biochemistry 1996;241: 262-264.

Misra N, Habib S, Ranjan A, Hasnain SE, Nath I. Expression and functional characterisation of the clpC gene of Mycobacterium leprae: ClpC protein elicits human antibody response. Gene 1996;172(1):99-104.

Chatterji U, Ahmad R, Venkaiah B, Hasnain SE. A recombination-efficient baculovirus vector for simultaneous expression of multiple genes. Gene1996;171(2):209-13.

Bomjen G, Raina A, Sulaiman IM, Hasnain SE, Dogra TD. Effect of storage of blood samples on DNA yield, quality and fingerprinting: a forensic approach. Indian Journal of Experimental Biology 1996;34(4):384-6.

Hasnain SE, Habib S, Jain A, Burma S, Mukherjee B. Host factor with single-stranded DNA-binding activity involved in transcription from baculovirus polyhedrin promoter. Methods in Enzymology 1996;274:20-32.


Ranjan A, Hasnain SE. Codon usage in the prototype baculovirus—Autographa californica nuclear polyhedrosis virus. Indian Journal of Biochemistry and Biophysics1995;32(6):424-8.

Sulaiman IM, Hasnain SE. DNA polymorphism analysis in five endangered species of Meconopsis (Himalayan poppy) using multi-copy sequence-based probes. Electrophoresis1995;16(9):1746-9.

Das A, Holloway B, Collins WE, Shama VP, Ghosh SK, Sinha S, Hasnain SE, Talwar GP, Lal AA. Species-specific 18S rRNA gene amplification for the detection of P. falciparum and P. vivax malaria parasites. Molecular and Cellular Probes 1995;9(3):161-5.

Sulaiman IM, Ehtesham NZ, Hasnain SE. A multicopy DNA sequence from Meconopsis simplicifolia discriminates between the different species of this endangered Himalayan poppy. Gene1995;156(2):223-7.

Mukherjee B, Burma S, Hasnain SE. The 30-kDa protein binding to the “initiator” of the baculovirus polyhedrin promoter also binds specifically to the coding strand. Journal of Biological Chemistry. 1995;270(9):4405-11.

Ranjan A, Hasnain SE. Influence of codon usage and translational initiation codon context in the AcNPV-based expression system: computer analysis using homologous and heterologous genes. Virus Genes1995;9(2):149-53.

Mukherjee B, Burma S, Talwar GP, Hasnain SE. Transcriptional regulation of cell line-dependent, baculovirus-mediated expression of foreign genes. DNA Cell Biology 1995;14(1):7-14.


Hasnain SE, Nakhai B, Ehtesham NZ, Sridhar P, Ranjan A, Talwar GP, Jha PK. Beta-subunit of human chorionic gonadotropin hormone and firefly luciferase simultaneously synthesized in insect cells using a recombinant baculovirus are differentially expressed and transported. DNA Cell Biology 1994;13(3):275-82.

Burma S, Mukherjee B, Jain A, Habib S, Hasnain SE. An unusual 30-kDa protein binding to the polyhedrin gene promoter of Autographa californica nuclear polyhedrosis virus. Journal of Biological Chemistry 1994;269(4):2750-7.

Sridhar P, Awasthi AK, Azim CA, Burma S, Habib S, Jain A, Mukherjee B, Ranjan A, Hasnain SE. Baculovirus vector-mediated expression of heterologous genes in insect cells. Journal of Biosciences1994;19: 603-614.

Burma S, Hasnain SE. The baculovirus expression vector system: Regulation of the polyhedrin gene promoter. Proceedings of Indian National Science Academy 1994;60: 365-374.


Sridhar P, Hasnain SE. Differential secretion and glycosylation of recombinant human chorionic gonadotropin (beta hCG) synthesized using different promoters in the baculovirus expression vector system. Gene 1993;131(2):261-4.

Sridhar P, Panda AK, Pal R, Talwar GP, Hasnain SE. Temporal nature of the promoter and not relative strength determines the expression of an extensively processed protein in a baculovirus system. FEBS Letters 1993;315(3):282-6.

Jain A, Hasnain SE. After split genes it is now split proteins. Current Science 1993; 65: 907.

Jha PK, Qadri A, Hasnain SE. A monoclonal antibody against firefly luciferase enzyme. Indian Journal of Experimental Biology 1993;31: 106.


Jha PK, Pal R, Nakhai B, Sridhar P, Hasnain SE. Simultaneous synthesis of enzymatically active luciferase and biologically active beta subunit of human chorionic gonadotropin in caterpillars infected with a recombinant baculovirus. FEBS Letters 1992;310(2):148-52.

Hasnain SE. Immunology: Pasteur’s Heritage – A review. Journal of American Medical Association. 1992;12: 100.

Ehtesham NZ, Hasnain SE. A multilocus probe for DNA fingerprinting. Advances in Forensic Haemogenetics 1992;4: 137.

Nakhai B, Sridhar P, Pal R, Talwar GP, Hasnain SE. Over-expression and characterization of recombinant beta subunit of the human chorionic gonadotropin hormone synthesized in insect cells infected with a genetically engineered baculovirus. Indian Journal of Biochemistry and Biophysics 1992;29(4):315-21.

Ehtesham NZ, Das A, Hasnain SE. A novel probe for human DNA fingerprinting based on chi-like sequences. Gene 1992;111(2):261-3.


Ehtesham NZ, Hasnain SE. Direct in-gel hybridization, without blotting, using nick-translated cloned DNA probe. Biotechniques 1991;11(6):718, 720, 722.

Nakhai B, Sridhar P, Talwar GP, Hasnain SE. Construction, purification and characterization of a recombinant baculovirus containing the gene for alpha subunit of human chorionic gonadotropin. Indian Journal of Biochemistry and Biophysics 1991;28(4):237-42.

Nakhai B, Pal R, Sridhar P, Talwar GP, Hasnain SE. The alpha subunit of human chorionic gonadotropin hormone synthesized in insect cells using a baculovirus vector is biologically active. FEBS Letters 1991;283(1):104-8.

Ehtesham NZ, Ma DP, Hasnain SE. Nucleotide sequence of a human satellite DNA. Gene 1991;98(2):301-2.

Jha PK, Ehtesham NZ, Dhar R, Hasnain SE. Intracellular trafficking of proteins in insect cells and larvae infected with recombinant baculovirus. Journal of Cellular Biochemistry 1991;15: 197.

Nakhai B, Sridhar P, Hasnain SE. Is processing of over-expressed proteins in insect cells infected with recombinant baculovirus impaired due to a “secretory load”? Journal of Cellular Biochemistry 1991;15: 201.

Raghupathy R, Hasnain SE. Basic and biomedical product-oriented research – the National Institute of Immunology.  Current Science 1991;60: 5.


Jha PK, Burma S, Mukherjee B, Hasnain SE. Expression of foreign genes in insect cells using baculovirus vectors. BioDigest1990;4: 93.

Jha PK, Nakhai B, Sridhar P, Talwar GP, Hasnain SE. Firefly luciferase, synthesized to very high levels in caterpillars infected with a recombinant baculovirus, can also be used as an efficient reporter enzyme in vivo. FEBS Letters 1990;274(1-2):23-6.

Ehtesham NZ, Talwar GP, Ali A, Hasnain SE. Molecular cloning of human satellite DNA sequences and their use in detecting DNA polymorphism. Indian Journal of Biochemistry and Biophysics 1990;27 (5):275-9.

Ma DP, Yang YW, King TY, Hasnain SE. The mitochondrial apocytochrome b gene from Chlamydomonas reinhardtii. Plant Molecular Biology. 1990;15(2):357-9.

Hasnain SE, Nakhai B. Expression of the gene encoding firefly luciferase in insect cells using a baculovirus vector. Gene 1990;91(1):135-8.


Ma DP, Yang YW, King YT, Hasnain SE. Nucleotide sequence of cloned nad4 (urf4) gene from Chlamydomonas reinhardtii mitochondrial DNA. Gene1989;85(2):363-70.

Derose RT, Ma DP, Kwon IS, Hasnain SE, Klassy RC, Hall TC. Characterization of the kafirin gene family from sorghum reveals extensive homology with zein from maize. Plant Molecular Biology 1989;12(3):245-56.

Ma DP, Yang YW, Hasnain SE. Nucleotide sequence of Chlamydomonas reinhardtii mitochondrial genes coding for tRNA(Gln) (UUG) and tRNA(Met) (CAU). Nucleic Acids Research 1989;17(3):1256.


Ma DP, Yang YW, Hasnain SE. Nucleotide sequence of Chlamydomonas reinhardtii mitochondrial genes coding for subunit 6 of NADH dehydrogenase and tRNATrp. Nucleic Acids Research 1988;16(23):11373.

Manavathu EK, Suryanarayana K, Hasnain SE and Leung WC. Presence of DNA sequences homologous to the ras oncogene in the aquatic fungus Achlya ambisexualis: Possible role in sporangiogenesis. Current Microbiology 1988;17:183.

Manavathu EK, Suryanarayana K, Hasnain SE, Leung WC. DNA-mediated transformation in the aquatic filamentous fungus Achlya ambisexualis. Journal of General Microbiology 1988;134(7):2019-28.


Hasnain SE, Manavathu EK, Leung WC. A method for DNA-mediated transformation of Chlamydomonas reinhardi. Biotechniques 1987;5: 110.

Hasnain SE, Manavathu EK, Leung WC.  pXmnATG: An E.coli  vector for expression of unfused proteins. Nucleic Acids Research 1987;15(9):3925.

Manavathu EK, Suryanarayana K, Hasnain SE, Leung M, Lau YF, Leung WC. Expression of herpes simplex virus thymidine kinase gene in aquatic filamentous fungus Achlya ambisexualis. Gene 1987;57(1):53-9.


Manavathu EK, Hasnain SE, Leung WC. Cloning of the Saccharomyces cerevisiae phosphoglycerate kinase gene: Use of synthetic oligonucleotide probes. The Nucleus 1986;29: 188.


Hasnain SE, Manavathu EK, Leung WC. DNA-mediated transformation of Chlamydomonas reinhardi cells: use of aminoglycoside 3′-phosphotransferase as a selectable marker. Molecular Cell Biology 1985;5(12):3647-50.


Hasnain SE, Khan MA, Upadhyaya KC. A deoxyribonuclease activity from Chlamydomonas reinhardi. Proceedings of  Indian National Science Academy 1982;B48: 416.

Hasnain SE, Khan MA, Upadhyaya KC. An ion stimulated plasma membrane ATPase activity from Chlamydomonas reinhardi.  Indian Journal of  Experimental Biology 1982;20: 85.

Hasnain SE, Upadhyaya KC. On the transport of 2-aminoisobutyric acid in Chlamydomonas protoplasts. Indian Journal of  Experimental Biology 1982;20(2):175-6.


Hasnain SE, Ganesan K, Upadhyaya KC. Mechanism of enhancement of DNA-uptake by polycations: effect of polycations on DNA, DNase & plasma membrane. Indian Journal of  Experimental Biology 1980;18(11):1230-2.

Hasnain SE, Khan MA, Khaneja K, Upadhyaya KC. Characterization of plasma membrane ATPase from Chlamydomonas reinhardi. Indian Journal of Biochemistry and Biophysics 1980;17: 58.

Hasnain SE, Khan MA, Upadhyaya KC. DNAse from Chlamydomonas reinhardi: Primary characterization and inhibition by polyamines. European Journal of Cellular Biology 1980;22: 100.

Upadhyaya KC, Hasnain SE. Genetic manipulation in photosynthetic eukaryotes: Uptake of exogenous DNA. Journal of Scientific Indian Research 1980;39: 641

Hasnain SE, Khan MA, Upadhyaya KC. Effect of polycations on thermal damage of C reinhardi protoplasts. Indian Journal of Experimental Biology 1980;18: 1037.